PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.135510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 645aa    MW: 72769.5 Da    PI: 5.4691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.135510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-064584911755
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     N++f  L+++lP++        +K++iL  +++Y+k+L+
  Cucsa.135510.1 458 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 491
                     99***********8.....58***************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-528189IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.026441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-4450496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-6456495No hitNo description
Gene3DG3DSA:4.10.280.104.6E-9458504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9458512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MACEPGFLRK QLAVAVKSIQ WSYAIFWSPS SRQHGVLEWC DGYYNGDIKT RKTVQAEDVH  60
VDNMGLHRSE QLRELYRSLL EGESEQRTKK PPASLSPEDL SDAEWYYLVC MSFFFNQGQG  120
LPGRALADDR TIWLCNAQYA ESTVFSRSLL AKSASIQTVV CFPYLGGVIE LGVTEQVSED  180
PSLLQHVKDF LLKFSKPICS KKPSSAAYKD DNGKEPMTAK SDNEIVEVLA MENLYCSTAV  240
KFDGKSVNGI QRKNNEFGID SLDDFSNGCE QYHPMEDTLR LEGAEGGASR FQSLQFLDDD  300
FSYGFQDSMN PSDCISEALA NQEKVSSSPR LKDANNLPLK EHQNPNHTQS GSLDPSSDED  360
MHYKRTIFTI LGSSTQLVGS PLLHNFSNRS NFIPWKKVVA ETHTPPMQQR MLKKILFAVP  420
LLSAGSLKGL KDEEQSILKQ GNNDSCTKNA TLDKLKENEK FMALKSMLPS LNEINKVSIL  480
NDTIKYLKML EARVQELETC MDSLYYEERF RRKYLDMVEQ TSDNYDYEKI EGSLKPSTNK  540
RKACEMDETD LKLKNDFPKV GRKLDVKVSM EEHEVLVDMH CPYREYILVD VMDALNDLQL  600
DAYSVQSSDH NGLFSLTLKS KFRGMAAASV GMIKLALLKV VNKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-1681919192Transcription factor MYC3
4rs9_A1e-1681919192Transcription factor MYC3
4rqw_B1e-1681919192Transcription factor MYC3
4rqw_A1e-1681919192Transcription factor MYC3
4ywc_B2e-16818748227Transcription factor MYC3
4ywc_A2e-16818748227Transcription factor MYC3
4rru_A2e-16818748227Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1904880.0JN190488.1 Cucumis sativus GL3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656339.10.0PREDICTED: transcription factor EGL1 isoform X2
TrEMBLI6N8K60.0I6N8K6_CUCSA; GL3
STRINGVIT_15s0046g02560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-149bHLH family protein